Applications - Revision history

Frank Everdij at 09:50, 14 September 2021

2021-09-14T09:50:44Z

← Older revision		Revision as of 11:50, 14 September 2021
Line 6:		Line 6:

	<pre>		<pre>
	[~~feverdij~~@hpc12:~]$ module avail		[jsmith@hpc12:~]$ module avail

	-------------------------------------------------- /usr/share/Modules/modulefiles --------------------------------------------------		-------------------------------------------------- /usr/share/Modules/modulefiles --------------------------------------------------
Line 60:		Line 60:
	module load matlab		module load matlab

	There are ~~two~~ versions of Matlab available, the command above selects the highest version (~~2016b~~). If for some reason you want to use the older version, type:		There are several versions of Matlab available, the command above selects the second-highest version (2020a). If for some reason you want to use the older version, type:

	module load matlab/~~2015a~~		module load matlab/2019b

	Now you can start Matlab from the commandline:		Now you can start Matlab from the commandline:

	<pre>		<pre>
	[jsmith@~~hpc10~~ ~]$ matlab		[jsmith@hpc12:~]$ matlab
	MATLAB is selecting SOFTWARE OPENGL rendering.		MATLAB is selecting SOFTWARE OPENGL rendering.

	< M A T L A B (R) >		< M A T L A B (R) >
	Copyright 1984-~~2016~~ The MathWorks, Inc.		Copyright 1984-2020 The MathWorks, Inc.
	~~R2016b~~ (9.1.0.~~441655~~) 64-bit (glnxa64)		R2020a Update 5 (9.8.0.1451342) 64-bit (glnxa64)
	~~September 7~~, ~~2016~~		August 6, 2020


	To get started, type ~~one of these: helpwin, helpdesk, or demo~~.		To get started, type doc.
	For product information, visit www.mathworks.com.		For product information, visit www.mathworks.com.

	>>		>>
	</pre>		</pre>

Line 86:		Line 86:
	Please note that not all applications that are available will actually work, some of them can only work on a few specific hpc clusters due to license restrictions.		Please note that not all applications that are available will actually work, some of them can only work on a few specific hpc clusters due to license restrictions.

	For example, software exclusive for the ~~HPC12~~ is Numeca, Abaqus, Vsaero, Convergence CFD and Simcenter Samcef		For example, software exclusive for the hpc12 is Numeca, Abaqus, Vsaero, Convergence CFD and Simcenter Samcef

Frank Everdij at 08:13, 14 September 2021

2021-09-14T08:13:19Z

← Older revision		Revision as of 10:13, 14 September 2021
Line 6:		Line 6:

	<pre>		<pre>
	[~~jsmith~~@~~hpc10~~ ~]$ module avail		[feverdij@hpc12:~]$ module avail

	------------------------ /usr/share/Modules/modulefiles ------------------------		-------------------------------------------------- /usr/share/Modules/modulefiles --------------------------------------------------
	dot module-git module-info modules null use.own		dot module-git module-info modules null use.own

	------------------------------- /etc/modulefiles -------------------------------		--------------------------------------------------------- /etc/modulefiles ---------------------------------------------------------
	mpi/openmpi-x86_64		mpi/openmpi-x86_64

	------------------------ /opt/ud/LOCAL/etc/modulefiles -------------------------		-------------------------------------------------- /opt/ud/LOCAL/etc/modulefiles ---------------------------------------------------
	abaqus/6.14 ~~gromacs~~/5.1.2 omni3d/5.5		abaqus/2019 edem/2018 nastran/2014.1
	~~adf~~/~~2016~~.~~103 intel/2013sp1~~ openfoam/2.2.2		abaqus/2021(default) eman/2.12 nastran/2014.1_sdk
	ansys/16.0 ~~intel/2016~~ openfoam/2.4.0		abaqus/6.14 eman/2.2 nastran/2018.2.1
	ansys/17.1 ~~libctl/3.2~~.2 openfoam/3.0.1		adf/2016.103 eman/2.21 nastran/2019
	ansys/17.2 ~~LOCAL~~ openfoam/4.1		ams/2020.101 eman/2.31 nastran/2019_fp1
	bader/0.28a ~~matlab~~/~~2015a patran~~/~~2010r1~~		ams/2021.102 emspring/0.86.1661 nastran/2020
	biogeme/2.4 ~~matlab~~/~~2016b~~ petsc/petsc-3.6.2		ansys/18.1 FDTD/8.15.758 numeca/2015-01
	~~comsol/50 matplotlib~~/1.5.1 phonopy/1.10.8		ansys/19.1 finemarine/5.1 omni3d/5.5
	comsol/51 ~~maui~~/3.3.1 ~~povray~~/3.7		ansys/2019r1 fsl/5.0.9 openfoam/2.2.2
	~~comsol~~/~~52 meep~~/1.3 sinfo/0.0.48		ansys/2019r2 geopsypack/2.9.0 openfoam/2.4.0
	cuda/7.~~0 mpi~~/~~openmpi-1.8.8-gnu~~ spinw/5.5		ansys/2019r3 gromacs/5.1.2 openfoam/3.0.1
	~~dipimage~~/2.~~8 mpi/openmpi-~~1.8.~~8-intel~~ tecplot/2015R1		ansys/2020r1 imod/4.9.2 openfoam/4.1
	~~FDTD~~/8.15.~~758 nastran~~/~~2010r1~~ torque/4.2.10		bader/0.28a intel/10.1 openfoam/v2006
	~~finemarine~~/5.~~1 nastran/2014~~.1 vasp/5.3.5-vtst		biogeme/2.4 intel/11.1 peet/1.11.1
	~~fsl~~/5.0.9 ~~nastran~~/~~2016~~.1.~~1 vasptest~~/5.~~4.1~~		chimera/1.11.2 intel/2013sp1 petsc/petsc-3.6.2
	~~geopsypack~~/2.9.~~0 numeca~~/~~2015~~-~~01 vsaero/7~~.7		cistem/1.0.0-beta intel/2016 phenix/1.13
			comsol/53a intel/2017u4 phonopy/1.10.8
			comsol/54 intel/2018u1 povray/3.7
			comsol/55(default) intel/2018u2 relion/2.0.5
			comsol/56 intel/2018u3 relion/2.1
			convergecfd/hpcx/3.0.19 intel/2019u2 relion/2.1.0
			convergecfd/intelmpi/3.0.19 intel/oneapi_2021u2 relion/2.1b1
			convergecfd/intelmpi_2018/3.0.19 lammps/29Oct20 samcef/2021.2i8
			convergecfd/mpich/3.0.19 libctl/3.2.2 scipion/1.0.1
			convergecfd/openmpi/3.0.19 LOCAL scipion/1.1
			ctffind/4.1.8 matlab/2017b sinfo/0.0.48
			cuda/10.2 matlab/2018a spinw/5.5
			cuda/11.2(default) matlab/2019b starccm+/2021.1.1
			cuda/7.0 matlab/2020a(default) tecplot/2015R1
			cuda/7.5 matlab/2020b tecplot/2017R2
			cuda/8.0 matplotlib/1.5.1 tecplot_for_converge/2020.1.0
			cuda/9.2 matplotlib/2.0.2 torque/4.2.10
			devtoolset/10 maui/3.3.1 vasp/5.3.5-vtst
			devtoolset/6 meep/1.3 vasptest/5.4.1
			devtoolset/8(default) meep/1.5 vsaero/7.7
			devtoolset/9 motioncor2/1.0 vsaero/7.9
			dipimage/2.8 motioncor2/1.0.5 vsaero/8.0
			dipimage/2.9 mpi/openmpi-1.8.8-gnu
			edem/2017 mpi/openmpi-1.8.8-intel
	</pre>		</pre>

Line 37:		Line 60:
	module load matlab		module load matlab

	There are two ~~verions~~ of Matlab available, the command above selects the highest version (2016b). If for some reason you want to use the older version, type:		There are two versions of Matlab available, the command above selects the highest version (2016b). If for some reason you want to use the older version, type:

	module load matlab/2015a		module load matlab/2015a
Line 62:		Line 85:

	Please note that not all applications that are available will actually work, some of them can only work on a few specific hpc clusters due to license restrictions.		Please note that not all applications that are available will actually work, some of them can only work on a few specific hpc clusters due to license restrictions.

			For example, software exclusive for the HPC12 is Numeca, Abaqus, Vsaero, Convergence CFD and Simcenter Samcef

Paul Keekstra: Created page with "There are a number of applications or software packages that can be used on the hpc clusters. To see what's available type: module avail The output will look like this:
2017-02-03T14:42:10Z

Created page with "There are a number of applications or software packages that can be used on the hpc clusters. To see what's available type: module avail The output will look like this: <p..."

New page
There are a number of applications or software packages that can be used on the hpc clusters. To see what's available type:

module avail

The output will look like this:

<pre>
[jsmith@hpc10 ~]$ module avail

------------------------ /usr/share/Modules/modulefiles ------------------------
dot module-git module-info modules null use.own

------------------------------- /etc/modulefiles -------------------------------
mpi/openmpi-x86_64

------------------------ /opt/ud/LOCAL/etc/modulefiles -------------------------
abaqus/6.14 gromacs/5.1.2 omni3d/5.5
adf/2016.103 intel/2013sp1 openfoam/2.2.2
ansys/16.0 intel/2016 openfoam/2.4.0
ansys/17.1 libctl/3.2.2 openfoam/3.0.1
ansys/17.2 LOCAL openfoam/4.1
bader/0.28a matlab/2015a patran/2010r1
biogeme/2.4 matlab/2016b petsc/petsc-3.6.2
comsol/50 matplotlib/1.5.1 phonopy/1.10.8
comsol/51 maui/3.3.1 povray/3.7
comsol/52 meep/1.3 sinfo/0.0.48
cuda/7.0 mpi/openmpi-1.8.8-gnu spinw/5.5
dipimage/2.8 mpi/openmpi-1.8.8-intel tecplot/2015R1
FDTD/8.15.758 nastran/2010r1 torque/4.2.10
finemarine/5.1 nastran/2014.1 vasp/5.3.5-vtst
fsl/5.0.9 nastran/2016.1.1 vasptest/5.4.1
geopsypack/2.9.0 numeca/2015-01 vsaero/7.7
</pre>

Now you can choose any of the applications from the list with the <code> module load</code> command. If, for example, you want to use Matlab, type:

module load matlab

There are two verions of Matlab available, the command above selects the highest version (2016b). If for some reason you want to use the older version, type:

module load matlab/2015a

Now you can start Matlab from the commandline:

<pre>
[jsmith@hpc10 ~]$ matlab
MATLAB is selecting SOFTWARE OPENGL rendering.

< M A T L A B (R) >
Copyright 1984-2016 The MathWorks, Inc.
R2016b (9.1.0.441655) 64-bit (glnxa64)
September 7, 2016

To get started, type one of these: helpwin, helpdesk, or demo.
For product information, visit www.mathworks.com.

>>
</pre>

If you have an X server running on your PC or laptop and you are logged in using X-forwarding, Matlab should start with a graphical desktop.

Please note that not all applications that are available will actually work, some of them can only work on a few specific hpc clusters due to license restrictions.